Private alleles in haploid samples

Question

[rennos]

I have two vcf files containing data from different populations of a haploid fungus (11 and 7 individuals in each population respectively). I wish to find alleles that are unique to each of the populations. I have attempted to use bcftools stats and bcftools isec to do this, but with no success. Is there a simple solution?

[Pierre Lindenbaum]

I have attempted to use bcftools stats and bcftools isec to do this, but with no success.

what went wrong ?