Identifying consensus sequence between multiple Arabidopsis genome sequences

Question

[bioinforesearchquestions]

Dear folks,

I have a list of Arabidopsis full genome sequence in FASTA format. I am planning to align against each of them and find

• Consensus sequence
• Genomes aligned to the consensus sequence with highlighted SNPs, indels and presence-absence variations

any suggestions (articles, tutorial, etc) to proceed further.

Can I use CLUSTALW or MUSCLE?

[vkkodali_ncbi]

NCBI has a few Arabidopsis genome assembly - assembly alignments here that may be of use to you.

[bioinforesearchquestions]

Hi VKKodali, I am trying to find consensus between the list of full genome sequence not against the reference.