Question: Identifying consensus sequence between multiple Arabidopsis genome sequences
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gravatar for bioinforesearchquestions
3 months ago by
United States
bioinforesearchquestions200 wrote:

Dear folks,

I have a list of Arabidopsis full genome sequence in FASTA format. I am planning to align against each of them and find

  • Consensus sequence
  • Genomes aligned to the consensus sequence with highlighted SNPs, indels and presence-absence variations

any suggestions (articles, tutorial, etc) to proceed further.

Can I use CLUSTALW or MUSCLE?

ADD COMMENTlink written 3 months ago by bioinforesearchquestions200

NCBI has a few Arabidopsis genome assembly - assembly alignments here that may be of use to you.

ADD REPLYlink written 12 weeks ago by vkkodali980

Hi VKKodali, I am trying to find consensus between the list of full genome sequence not against the reference.

ADD REPLYlink modified 12 weeks ago • written 12 weeks ago by bioinforesearchquestions200
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