Identifying consensus sequence between multiple Arabidopsis genome sequences
0
0
Entering edit mode
6.0 years ago

Dear folks,

I have a list of Arabidopsis full genome sequence in FASTA format. I am planning to align against each of them and find

  • Consensus sequence
  • Genomes aligned to the consensus sequence with highlighted SNPs, indels and presence-absence variations

any suggestions (articles, tutorial, etc) to proceed further.

Can I use CLUSTALW or MUSCLE?

Alignment Consensus SNPs Variations Plant • 1.2k views
ADD COMMENT
0
Entering edit mode

NCBI has a few Arabidopsis genome assembly - assembly alignments here that may be of use to you.

ADD REPLY
0
Entering edit mode

Hi VKKodali, I am trying to find consensus between the list of full genome sequence not against the reference.

ADD REPLY

Login before adding your answer.

Traffic: 1312 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6