FEELnc and how to work with the results
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4.8 years ago
iraia.munoa ▴ 130

Hi everybody,

I am using FEELnc to annotate all lncRNAs present in my RNA-Seq samples. But when understanding the results I don't know how to read them. What are the steps to follow after using FEELnc_filter.pl (first step)? Are they all the lncRNAs that match with my RNA-seq samples? To know the name of them do I need to intersect with for example a lncRNA database (lncRBase, http://bicresources.jcbose.ac.in/zhumur/lncrbase/) ?

Or do I need to performe the next two steps and only work with the las output (after FEELnc_classifier.pl)? I am wrong thinking that they only are new or unknown lncRNAs?

Finally is there a tool or something to match each lncRNA with the partner gene or something like a gene ontology site to work with lncRNAs?

Thanks in advance

Iraia

FEELnc RNA-Seq lncRNA • 1.4k views
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