Question: SPANR result interpretation
0
gravatar for nkausthu
2.1 years ago by
nkausthu30
nkausthu30 wrote:

Hi,

I have an intronic variant which lies ~70bp upstream of an exon and I have used splicing-based Analysis of Variants (SPANR) to know the impact of a an intronic variant. Unfortunately, I am unable to interpret the results given and not able to find any tutorial regarding the tool. It would be really great if someone can give suggestions on this or suggest any other tools which can be used for the same (other than mutationtaster, HSF, Intsplice,Netgene2). Thank you

ADD COMMENTlink modified 2.1 years ago by Kevin Blighe69k • written 2.1 years ago by nkausthu30
0
gravatar for Kevin Blighe
2.1 years ago by
Kevin Blighe69k
Republic of Ireland
Kevin Blighe69k wrote:

You have not pasted the results here, so, nobody can comment. If you must use SPANR, then consider contacting the author(s) of the program.

I list some other splice predictors here:

ADD COMMENTlink written 2.1 years ago by Kevin Blighe69k
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