Question: how to generate genetic maps from VCF snps data
0
gravatar for mab658
22 months ago by
mab65880
mab65880 wrote:

Hi Everyone,

Could someone guide me on how to generate genetic map from snps VCF file in order to use it for imputation. I have filtered my snps VCF file and I need genetic map for the imputation. I got to know that one can use PLINK. I need to know what I need to extract from my data prior to using PLINK. Thanks

sequencing snp • 1.5k views
ADD COMMENTlink modified 5 months ago by Kevin Blighe66k • written 22 months ago by mab65880
0
gravatar for Kevin Blighe
5 months ago by
Kevin Blighe66k
Kevin Blighe66k wrote:

The genetic maps are available from here:

I also have them saved on my own online storage.

Kevin

ADD COMMENTlink written 5 months ago by Kevin Blighe66k
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