Question: how to generate genetic maps from VCF snps data
gravatar for mab658
22 months ago by
mab65880 wrote:

Hi Everyone,

Could someone guide me on how to generate genetic map from snps VCF file in order to use it for imputation. I have filtered my snps VCF file and I need genetic map for the imputation. I got to know that one can use PLINK. I need to know what I need to extract from my data prior to using PLINK. Thanks

sequencing snp • 1.5k views
ADD COMMENTlink modified 5 months ago by Kevin Blighe66k • written 22 months ago by mab65880
gravatar for Kevin Blighe
5 months ago by
Kevin Blighe66k
Kevin Blighe66k wrote:

The genetic maps are available from here:

I also have them saved on my own online storage.


ADD COMMENTlink written 5 months ago by Kevin Blighe66k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1231 users visited in the last hour