Question: Identifying direct repeats in flanking sequences of deletions
0
gravatar for Emilie
5 days ago by
Emilie0
Emilie0 wrote:

Hi,

I have performed NGS and have identified a list of genomic deletions indicated by genomic position.

Now, I want to find out if deletions are flanked by direct repeats. I.e, for each individual deletion, are direct repeats presents (say in ~10bp from the deletion start/end point), but direct repeats do not have to be similar between different deletions.

Can anyone point me in the direction of a tool to help me with this? I am looking for something that might output either yes/no answer or better yet some sort of "direct repeat score" for each deletion.

Thanks!

ADD COMMENTlink written 5 days ago by Emilie0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1110 users visited in the last hour