Entering edit mode
5.3 years ago
Bioinfonext
▴
460
queue instance "byslot.q@node001.prv.kelvin.compute.estate" dropped because it is full
queue instance "byslot.q@node023.prv.kelvin.compute.estate" dropped because it is full
queue instance "byslot.q@node060.prv.kelvin.compute.estate" dropped because it is full
queue instance "byslot.q@node054.prv.kelvin.compute.estate" dropped because it is full
(no project) does not have the correct project to run in cluster queue "interactive.q"
cannot run in queue "bynode.q" because PE "smp-verbose" is not in pe list
(-l h_rt=259200,himem=false) cannot run in queue "smp01.prv.kelvin.compute.estate" because it offers only hf:himem=true
(-l h_rt=259200,himem=false) cannot run in queue "smp02.prv.kelvin.compute.estate" because it offers only hf:himem=true
cannot run in PE "smp-verbose" because it only offers 0 slots
Job Script is:
#!/bin/bash
#########################
#run_bbduk
#$ -N bbduk
#$ -o /mnt/scratch/users/3052/`enter code here`ITS
#$ -pe smp-verbose 20
module add BBTools/38.34
#$ -wd /mnt/scratch/users/3052/ITS
bbduk.sh in=Soil-10_S52_L001_R1_001.fastq in2=Soil-10_S52_L001_R2_001.fastq out=Soil-10_S52_L001_R1_001.trim.fastq out2=Soil-10_S52_L001_R2_001.trim.fastq ref=all_adapter.fa qtrim=rl trimq=20
bbduk.sh in=Soil-11_S42_L001_R1_001.fastq in2=Soil-11_S42_L001_R2_001.fastq out=Soil-11_S42_L001_R1_001.trim.fastq out2=Soil-11_S42_L001_R2_001.trim.fastq ref=all_adapter.fa qtrim=rl trimq=20