Question: Reciprocal blast hit
0
gravatar for BioBaby
5 months ago by
BioBaby0
BioBaby0 wrote:

hello, I tried to find out homologous between two species for that I did reciprocal blast means A to B and B to A. so now I having two blast output in tabular format but now I do not how to find RBH.I searched for script but could not find suitable for my data. please help me..

rna-seq next-gen alignment • 216 views
ADD COMMENTlink modified 5 months ago by colindaven1.5k • written 5 months ago by BioBaby0
0
gravatar for colindaven
5 months ago by
colindaven1.5k
Hannover Medical School
colindaven1.5k wrote:

I like using proteinortho for this task. It will give you a single table containing reciprocal blast hits and just requires one command to run.

https://www.bioinf.uni-leipzig.de/Software/proteinortho/

ADD COMMENTlink written 5 months ago by colindaven1.5k

Thanks @colindaven for your positive response. I used OMA https://omabrowser.org/standalone/

ADD REPLYlink modified 5 months ago • written 5 months ago by BioBaby0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1742 users visited in the last hour