Question: Reciprocal blast hit
0
gravatar for BioBaby
27 days ago by
BioBaby0
BioBaby0 wrote:

hello, I tried to find out homologous between two species for that I did reciprocal blast means A to B and B to A. so now I having two blast output in tabular format but now I do not how to find RBH.I searched for script but could not find suitable for my data. please help me..

rna-seq next-gen alignment • 105 views
ADD COMMENTlink modified 27 days ago by colindaven1.0k • written 27 days ago by BioBaby0
0
gravatar for colindaven
27 days ago by
colindaven1.0k
Hannover Medical School
colindaven1.0k wrote:

I like using proteinortho for this task. It will give you a single table containing reciprocal blast hits and just requires one command to run.

https://www.bioinf.uni-leipzig.de/Software/proteinortho/

ADD COMMENTlink written 27 days ago by colindaven1.0k

Thanks @colindaven for your positive response. I used OMA https://omabrowser.org/standalone/

ADD REPLYlink modified 26 days ago • written 26 days ago by BioBaby0
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