Question: Aligning FASTA sequences to ENCODE database?
0
gravatar for noadbsk
7 months ago by
noadbsk0
noadbsk0 wrote:

Hello,

I have the FASTA sequence of a human gene derived from a BAC library, and I would like to align the sequence to the ENCODE database to see if there are any putative non-coding regulatory elements in my sequence (and where exactly they are located). Is there any way this could be done? I would appreciate any help. Thank you!

ADD COMMENTlink modified 5 months ago by Biostar ♦♦ 20 • written 7 months ago by noadbsk0
1
gravatar for lieven.sterck
5 months ago by
lieven.sterck5.8k
VIB, Ghent, Belgium
lieven.sterck5.8k wrote:

what exactly do you mean with "the ENCODE database"?

if you go to https://www.encodeproject.org/ and know the region where your gene is located in the human genome, you can apparently simply fill in the 'search for regulatory elements" field

ADD COMMENTlink written 5 months ago by lieven.sterck5.8k
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