Entering edit mode
5.2 years ago
David_emir
▴
490
Hi All,
I am looking for downloading Only Normal Samples (RNA-seq) Raw counts for Pancreatic Adenocarcinoma from International Cancer Genome Consortium (ICGC), But, I am ending up downloading only Tumor samples file, can you guys let me know how to get Normal samples Raw counts from ICGC?
Regards
Dave.
Hi Kevin,
I am downloading the data from ICGC-Pancreatic Cancer. The Sequencing-based Gene Expression data file contains 91 samples. whereas the Clinical Specimen file says it also contains Solid normal samples which I am not able to download. For Example Specimen Ids such as "SP108126, SP108104, SP108107, SP108090, SP108052, SP108072, SP108069" are missing and all 91 samples are from Tumors. It would be great if you let me know how to download the normal samples.
I believe DACO controls access to that data: https://icgc.org/index.php?q=daco
You can contact them at dcc-support@icgc.org
The usual program to download the data is icgc-get