Question: How to get derived allele count for a list of SNPs
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gravatar for seta
9 weeks ago by
seta1.1k
Sweden
seta1.1k wrote:

Hi all,

I was wondering how I can obtain the derived allele count for a list of SNP variants in human (hg 38)? I also have the corresponding vcf file for these variants. Also, please kindly let me know if I can use Fisher's test for comparing DAF (derived allele frequency) between populations? In this case, I also need the ancestral count for creating the contingency table, yes?

Any suggestions and comments would be highly appreciated.

Best

derived allele population vcf • 134 views
ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by seta1.1k
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