Question: How to get derived allele count for a list of SNPs
0
gravatar for seta
20 months ago by
seta1.4k
Sweden
seta1.4k wrote:

Hi all,

I was wondering how I can obtain the derived allele count for a list of SNP variants in human (hg 38)? I also have the corresponding vcf file for these variants. Also, please kindly let me know if I can use Fisher's test for comparing DAF (derived allele frequency) between populations? In this case, I also need the ancestral count for creating the contingency table, yes?

Any suggestions and comments would be highly appreciated.

Best

derived allele population vcf • 515 views
ADD COMMENTlink modified 20 months ago • written 20 months ago by seta1.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 917 users visited in the last hour