is there any tools that can be used to scan an input sequence and predict any potential regulatory element within that sequence?
in fact i got one such sequence (chicken) which was supposed to be bound by some regulator, e.g., TF, however, we are not sure what the exact regulator is?
so I guess that I may first try to identify the binding element within that sequence first, than experiment may go further to help detect that TF.
am I right ?
Thanks in advance!