Looking for recommendation: What tool can I use to reliably generate Transposable elements from a Genome?
Entering edit mode
2.8 years ago
jaqx008 ▴ 110

Hello, I currently have a TE.bed file that contains scaffold names not identical to those in the genome i am currently using. I am looking for a reliable tool to help generate all TE categories. I tried repeatmasker but I dont like the output file as only simple repeats and low-complexity TEs were called or produced where as the old file has in addition LINES, SINEs LTRs and DNA transposons in them. I will appreciate your recommendations of a reliable tool I can use. Thanks

TE mapping Repeat elements • 465 views

Login before adding your answer.

Traffic: 2226 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6