Question: Quality control after genotype imputation
0
gravatar for jzannatun
8 months ago by
jzannatun0
jzannatun0 wrote:

Can anyone kindly explain me the possible ways of quality control of imputed data? Any reference papers or site describing post imputation quality control would be highly appreciated. I am quite new in this field. I have used BEAGLE for imputation. Thank you in advance.

imputation • 694 views
ADD COMMENTlink modified 8 months ago • written 8 months ago by jzannatun0

Different programs such as BEAGLE and IMPUTE2 have different guidelines for post imputation quality control, which I am not an expert on. Those who might be able to help you would benefit from knowing what program you used for imputation to guide responses to you.

ADD REPLYlink written 8 months ago by jean.elbers1.3k
0
gravatar for jzannatun
8 months ago by
jzannatun0
jzannatun0 wrote:

Dear jean.elbers I have used BEAGLE for imputation

ADD COMMENTlink written 8 months ago by jzannatun0
1

This article may be of help - https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137601

ADD REPLYlink written 8 months ago by jean.elbers1.3k

Thank you. I am reading the article.

ADD REPLYlink written 8 months ago by jzannatun0
1

So, someone else chimed in on BEAGLE post imputation quality control, see A: Beagle imputation results quality control

ADD REPLYlink written 8 months ago by jean.elbers1.3k

Thanks a lot! I hope I can finish my work soon.

ADD REPLYlink written 8 months ago by jzannatun0
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