Question: Quality control after genotype imputation
0
gravatar for jzannatun
20 months ago by
jzannatun0
jzannatun0 wrote:

Can anyone kindly explain me the possible ways of quality control of imputed data? Any reference papers or site describing post imputation quality control would be highly appreciated. I am quite new in this field. I have used BEAGLE for imputation. Thank you in advance.

imputation • 1.5k views
ADD COMMENTlink modified 20 months ago • written 20 months ago by jzannatun0

Different programs such as BEAGLE and IMPUTE2 have different guidelines for post imputation quality control, which I am not an expert on. Those who might be able to help you would benefit from knowing what program you used for imputation to guide responses to you.

ADD REPLYlink written 20 months ago by jean.elbers1.4k

Dear jean.elbers I have used BEAGLE for imputation

ADD REPLYlink written 20 months ago by jzannatun0
1

This article may be of help - https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137601

ADD REPLYlink written 20 months ago by jean.elbers1.4k

Thank you. I am reading the article.

ADD REPLYlink written 20 months ago by jzannatun0
1
gravatar for jean.elbers
19 months ago by
jean.elbers1.4k
jean.elbers1.4k wrote:

So, someone else chimed in on BEAGLE post imputation quality control, see A: Beagle imputation results quality control

ADD COMMENTlink written 19 months ago by jean.elbers1.4k

Thanks a lot! I hope I can finish my work soon.

ADD REPLYlink written 19 months ago by jzannatun0
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