Question: How to make an Exon Junction BED file from ENSEMBL
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gravatar for QVINTVS_FABIVS_MAXIMVS
6 months ago by
USA SoCal
QVINTVS_FABIVS_MAXIMVS2.3k wrote:

I want to make an exon junction bed file to use for olego for the CAST strain of mouse. Ensembl has the reference genome and GTF files for this strain. Are there any tools to make an exon junction bed file for this strain?

exon junction • 310 views
ADD COMMENTlink modified 5 months ago by Biostar ♦♦ 20 • written 6 months ago by QVINTVS_FABIVS_MAXIMVS2.3k
1
gravatar for Alex Reynolds
6 months ago by
Alex Reynolds28k
Seattle, WA USA
Alex Reynolds28k wrote:

A: How can I count read that falls into exon-intron and exon-exon junction?

ADD COMMENTlink written 6 months ago by Alex Reynolds28k

Thanks I think this will do it friendo

ADD REPLYlink written 6 months ago by QVINTVS_FABIVS_MAXIMVS2.3k
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