Question: How to make an Exon Junction BED file from ENSEMBL
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gravatar for QVINTVS_FABIVS_MAXIMVS
10 weeks ago by
USA SoCal
QVINTVS_FABIVS_MAXIMVS2.2k wrote:

I want to make an exon junction bed file to use for olego for the CAST strain of mouse. Ensembl has the reference genome and GTF files for this strain. Are there any tools to make an exon junction bed file for this strain?

exon junction • 150 views
ADD COMMENTlink modified 5 weeks ago by Biostar ♦♦ 20 • written 10 weeks ago by QVINTVS_FABIVS_MAXIMVS2.2k
1
gravatar for Alex Reynolds
10 weeks ago by
Alex Reynolds28k
Seattle, WA USA
Alex Reynolds28k wrote:

A: How can I count read that falls into exon-intron and exon-exon junction?

ADD COMMENTlink written 10 weeks ago by Alex Reynolds28k

Thanks I think this will do it friendo

ADD REPLYlink written 10 weeks ago by QVINTVS_FABIVS_MAXIMVS2.2k
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