vcf filtration for homozygous calls
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2.2 years ago

Freebayes has called some records with the GT = 1/1 tag, even if there are non-zero values for RO, SRF and SRR. We want to filter and retain only those records that show = > 90% alternate allele frequency. Is there any tool which can help in doing this?

vcf AO GT SRF SRR • 350 views
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Take a look at BCFtools view and filter

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