Question: vcf filtration for homozygous calls
0
gravatar for nikhilachowdary1999
7 months ago by
nikhilachowdary19990 wrote:

Freebayes has called some records with the GT = 1/1 tag, even if there are non-zero values for RO, SRF and SRR. We want to filter and retain only those records that show = > 90% alternate allele frequency. Is there any tool which can help in doing this?

srr gt srf ao vcf • 166 views
ADD COMMENTlink written 7 months ago by nikhilachowdary19990

Take a look at BCFtools view and filter

ADD REPLYlink written 7 months ago by Kevin Blighe49k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2065 users visited in the last hour