pssm for rpsblast
0
0
Entering edit mode
5.2 years ago
lagartija ▴ 160

Hi,

I'm trying to make a database for rpsblast but I don't know how to create a pssm for the database. I have an alignment in fasta format : https://prosite.expasy.org/cgi-bin/aligner?psa=PS50104&format=FASTA and I can also get more information about this domain on prosite : https://prosite.expasy.org/PS50104#cross_ref

I see that before people used formatdb but it is not in use anymore. Could you explain to me how to proceed ?

Thank you very much

domains • 814 views
ADD COMMENT

Login before adding your answer.

Traffic: 2465 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6