Question: How do I download TCGA SNV data for patients with ER+/HER2- breast cancer?
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gravatar for graeme.thorn
4 weeks ago by
graeme.thorn40
London, United Kingdom
graeme.thorn40 wrote:

As per the question above, I want to download variation data for ER+ HER2- patients only from the TGCA. There is no option to facet in the GDC Data Portal to get these patients only, and I don't want to have to download all the data from the 1000+ patients and filter them afterwards if I don't have to.

Is there a quick way to obtain data from only these patients?

snp tcga • 120 views
ADD COMMENTlink modified 4 weeks ago by Kevin Blighe41k • written 4 weeks ago by graeme.thorn40
1
gravatar for Kevin Blighe
4 weeks ago by
Kevin Blighe41k
Kevin Blighe41k wrote:

Information on receptor status can be found in the clinical data: A: How to download triple negative breast cancer RNA-seq fpkm data from GDC.

Kevin

ADD COMMENTlink written 4 weeks ago by Kevin Blighe41k
1

Thanks! I managed to get some of it out of cBioPortal too, but I aggregated enough together to get what I needed to.

ADD REPLYlink written 26 days ago by graeme.thorn40
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