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• How To Get Bed File Containing Exons Of Canonical Transcripts And Their Corresponding Gene Symbols
  Hi everyone, I need a bed file containing starts and ends of the exons, gene name and number of...
• ANNOVAR - RefSeq Annotation
  Hello, I have questions regarding the RefSeq annotation of ANNOVAR. When a variant is "exonic" ...
• Where Are Canonical Transcripts In Recent Ensembl Genes?
  Any ideas why recent releases of Ensembl human genes (e.g. 66 & 67) do not provide canonical ...
• Filtering transcripts by transcript support level (TSL)
  Hi, I have a question on filtering transcripts from Ensemble by transcription support levels (TS...
• How to retrieve "UTR" sequence from "Exon" of "Canonical Transcript" from a list of gene symbols?
  Hi,  I'm trying to retrive "UTR" sequence (i.e. 5'UTR sequence) from "Exon" of "Canonical Transc...
• Tell Canonical Isoform/Trancsript in gencode
  Hey, is there a way to tell which of the transcripts for a given gene corresponds to the canonic...
• How does VEP decide on canonical transcripts and is there a list?
  Hi there, I've used VEP (GRCh38.90) with the option --canonical to annotate my variants from WE...
• Transcription of ncRNA
  Is ncRNA transcripted only from introns? If not, is ncRNA transcripted also from exons or a comb...
• Human Alternative Isoforms In Uniprot
  Hi, I have been working with a couple of human alternative isoforms listed in uniprot database....
• Mimic WES on WGS data + A comprehensive list of coding regions in the most biologically relevant transcripts
  Dear peers, I have the results of WGS in the FASTQ, BAM and VCF formats to be interpreted using ...
• Identify jumbled transcripts (scrambled exons) using HISAT2, stringtie, and GFFcompare?
  I have some PacBio RNA-seq data that should have a jumbled gene in it (e.g. the exons are not in ...
• Finding the transcript with UniProt canonical sequence (or ID)
  I have UniProt canonical sequence and UniProtID. Is there any easy way (like Biopython) to get th...
• Source Of Drosophila (Dm3) Canonical Transcripts?
  Background: I have been using the UCSC gene knownCanonical transcript lists available for mammal...