How to add a individuals IDs to admixture output?
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3.1 years ago
rimgubaev ▴ 280

The output of my admixture command looks like that:

0.807781 0.103628 0.000010 0.088581
0.000010 0.340997 0.658983 0.000010
0.043489 0.516310 0.428646 0.011555
0.000010 0.999970 0.000010 0.000010
0.000010 0.297796 0.702184 0.000010
0.999970 0.000010 0.000010 0.000010
0.000010 0.786360 0.213620 0.000010
0.878834 0.056439 0.000010 0.064717
etc.

Is it possible to add a column with individuals IDs? I did not find an appropriate option in admixture.

admixture population genetics • 960 views
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5 months ago
Hu ▴ 10

Hi:

I'm using the admixture and I'm having the same problem. Whether your issue has been resolved ? I think maybe we can discuss this issue. Thanks

ling

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The order is the same as in the .fam file which appears after one converts vcf to plink for ADMIXTURE! You just simply add it in R as an additional column and/or row names.

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