How to add a individuals IDs to admixture output?
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5.2 years ago
rimgubaev ▴ 330

The output of my admixture command looks like that:

0.807781 0.103628 0.000010 0.088581
0.000010 0.340997 0.658983 0.000010
0.043489 0.516310 0.428646 0.011555
0.000010 0.999970 0.000010 0.000010
0.000010 0.297796 0.702184 0.000010
0.999970 0.000010 0.000010 0.000010
0.000010 0.786360 0.213620 0.000010
0.878834 0.056439 0.000010 0.064717
etc.

Is it possible to add a column with individuals IDs? I did not find an appropriate option in admixture.

admixture population genetics • 1.9k views
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2.6 years ago
Hu ▴ 10

Hi:

I'm using the admixture and I'm having the same problem. Whether your issue has been resolved ? I think maybe we can discuss this issue. Thanks

ling

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The order is the same as in the .fam file which appears after one converts vcf to plink for ADMIXTURE! You just simply add it in R as an additional column and/or row names.

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Hi there! I was wondering if any of you knew how to tell which of the populations were represented in the Q file. Like in your data set, do you know which of the populations are represented in the columns? I know that the rows belong to each individual, but I am unsure as to what order ADMIXTURE put the populations in? Any help would be appreciated.

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