Question: Transcription Factor Enrichment Analysis
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gravatar for shruthih
17 months ago by
shruthih0
shruthih0 wrote:

Is there some some tools to detect enrichment of transcription factors from microarray/RNAseq data? I have data sets from mouse and c.elegans

ADD COMMENTlink modified 17 months ago • written 17 months ago by shruthih0

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You mean genes encoding for transcription factors enriched in your differentially-expressed genes? If not, please elaborate.

ADD REPLYlink written 17 months ago by ATpoint38k

Yes - Tools to detect genes encoding for transcription factors from microarray/RNAseq data?

ADD REPLYlink written 17 months ago by shruthih0

It's still not really clear what you want. Why can't you just do a standard differential expression analysis and pull out transcription factor genes from a list afterwards? Or are you trying to actually show that transcription factor genes are enriched in your differentially expressed gene set, as ATpoint said?

ADD REPLYlink written 17 months ago by jared.andrews077.1k
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