Can I build a phylgenetic tree using SNPs obtained by differen techniques?
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5.2 years ago
rimgubaev ▴ 330

I had GBS libraries for several plant lines then I performed SNP calling using GATK pipeline. So my question is the following: is it appropriate to compare obtained SNPs with SNPs obtained in other studies by arrays or RAD-seq for example? Namely I want to build a phylogenetic tree and see how my plant lines relate to the already published.

GBS Population genetics array SNP • 856 views
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