Only 1 linkage group after filtering MSTmap result
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2.5 years ago
Ric ▴ 360

Hi, We have one population consisted of 192 F3 lines resulting from a cross between two plant genomes (GBS). I ran MSTmap which lead to more than 100 linkage groups. Unfortufuntaly, after filtering out linkage groups with less than 15 markers, I remained only with one linkage group. The input file for MSTmap has been generated by Genotype-Corrector (https://www.nature.com/articles/s41598-018-28294-0).

What did I miss?

Thank you in advance,

alignment snp genetic linkage map • 361 views
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