Question: ERROR in MutSigCV : Structure is missing required field "Variant_Classification"
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gravatar for starymate
5 months ago by
starymate0
starymate0 wrote:

Hi, Seniors

I'm beginner at MutSigCV.

I wanna set up and run MutSigCV in my lab server. So I installed MutSigCV1.41 and Matlab2016a runtime compiler.

And Now I'm trying to run MutSigCV using this command : sh run_MutSigCV.sh absolute_path/v901 absolute_path/LUSC.mutations.maf absolute_path/LUSC.coverage.txt absolute_path/gene.covariates.txt myresult.txt absolute_path/mutation_type_dictionary.v4.txt absolute_path/chr_files_hg19/

All of the input data is specified by file name with absolute path in my server.

after this command I got this error : Error using MutSigCV>require_fields (line 3674) Structure is missing required field "Variant_Classification"

I think it is strange because the input I used is example input. and through checking file, I found the column that is "Variant_Classification" in .maf file.

Could you let me know the reason of this Error?

"specification"

  • Ubuntu 12.04 or 16.04 ( according to documentation of MATLAB 2016a is proper to Ubuntu 14.04. But execution file execute properly. could it be cause of this problem? Is there anyone else using it in another version? )
mutsigcv snp software error • 143 views
ADD COMMENTlink modified 5 months ago by WouterDeCoster41k • written 5 months ago by starymate0
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