I am using GenomeView to visualize these contents.
SAM file with reads mapped onto the assembled contig MAF file with 20 blast hits of the assembled contig And, Reference assembled contig
I have been trying to visualize these all together in Genomeview but not successful. Can someone please let me know how can I visualize these all together in Genomview or a viewer or gene annotator? Is it possible to visualize all these together? I am trying to manually curate my gene annotations. I would really appreciate.