Question: View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
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gravatar for DanielC
19 months ago by
DanielC130
Canada
DanielC130 wrote:

Dear Friends,

I am using GenomeView to visualize these contents.

SAM file with reads mapped onto the assembled contig

MAF file with 20 blast hits of the assembled contig

And, Reference assembled contig

I have been trying to visualize these all together in Genomeview but not successful. Can someone please let me know how can I visualize these all together in Genomview or a viewer or gene annotator? Is it possible to visualize all these together? I am trying to manually curate my gene annotations. I would really appreciate.

Thanks

sam bam viewer maf • 418 views
ADD COMMENTlink modified 19 months ago • written 19 months ago by DanielC130
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