Question: Question on patterns search in DNA sequences
0
gravatar for savella.417
8 days ago by
savella.4170 wrote:

Greetings.

I am looking for tools that could search for ambiguous sequence patterns in the DNA sequences: for example YYYGGGYYRRGGCYYY or using a weighted matrix

Thanx

sequencing sequence genome • 63 views
ADD COMMENTlink modified 16 hours ago by max.rempel20 • written 8 days ago by savella.4170

Your pattern doesn't looks like DNA you should describe more your question. Maybe you speak about blastx

ADD REPLYlink written 8 days ago by Titus850

The pattern is using IUPAC codes - basically Y are pyrimidines and R are purines.

ADD REPLYlink written 8 days ago by max.rempel20

Ok so , seaching pattern in databases ? genomes ?

I try blast accept R and .

ADD REPLYlink written 8 days ago by Titus850

I am interested too.

ADD REPLYlink written 8 days ago by max.rempel20
0
gravatar for max.rempel2
16 hours ago by
max.rempel20 wrote:

Ugene is a windows program and it does that (only in one strand, but still pretty useful).

ADD COMMENTlink written 16 hours ago by max.rempel20
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