Question: Question on patterns search in DNA sequences
0
gravatar for savella.417
6 months ago by
savella.4170 wrote:

Greetings.

I am looking for tools that could search for ambiguous sequence patterns in the DNA sequences: for example YYYGGGYYRRGGCYYY or using a weighted matrix

Thanx

sequencing sequence genome • 183 views
ADD COMMENTlink modified 5 months ago by max.rempel20 • written 6 months ago by savella.4170

Your pattern doesn't looks like DNA you should describe more your question. Maybe you speak about blastx

ADD REPLYlink written 6 months ago by Titus900

The pattern is using IUPAC codes - basically Y are pyrimidines and R are purines.

ADD REPLYlink written 6 months ago by max.rempel20

Ok so , seaching pattern in databases ? genomes ?

I try blast accept R and .

ADD REPLYlink written 6 months ago by Titus900

I am interested too.

ADD REPLYlink written 6 months ago by max.rempel20
0
gravatar for max.rempel2
5 months ago by
max.rempel20 wrote:

Ugene is a windows program and it does that (only in one strand, but still pretty useful).

ADD COMMENTlink written 5 months ago by max.rempel20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1259 users visited in the last hour