Question: Which test is applied in order to generate p-values in TASSEL when using Mixed Linear Model?
gravatar for rimgubaev
10 months ago by
rimgubaev180 wrote:

Hello everyone! I could not find the statistical test which is utilized by TASSEL when running mixed liner model to find SNP-phenotype association. Googling on this topic had no success: The article on TASSEL ( say that F-test is utilized for general linear model, but there is nothing said on mixed liner model. In Google groups (!topic/tassel/G3gL3eocMHQ) and Biostars (Association Mapping And Fdr (False Discovery Rate) Test?) it is mentioned that TASSEL utilizes nominal test. If I am not mistaken nominal test is chi-square and If so it is confusing what data is in chi-square table? The number of observed SNPs and number expected SNPs affecting trait?

statistical test tassel gwas • 346 views
ADD COMMENTlink modified 10 months ago by Biostar ♦♦ 20 • written 10 months ago by rimgubaev180
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1143 users visited in the last hour