GATK4,Cann't get right CalculateContamination result
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2.5 years ago
11yj3312 ▴ 10

Question regarding CalculateContamination(GATK/4.1.2.0):

With CalculateContamination in tumor matched mode, I get: contamination error NaN 1.0

When I look at the tumor.table and normal. table files generated by Getpileupsummaries, I don't see any unusual data structure/value

What can be the problem?

gatk4 somatic mutation • 685 views
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