I'm working on transcriptomic data of human samples, for which I have detected more than 100 expressed lincRNAs. I want to perform a pathway enrichment study on these lncRNAs, How am I supposed to this?
Because, I have the Ensembl Gene_IDs and Gene.Symbols for these lincRNAs, but only 4 lincRNAs of them have Entrez_IDs. And R packages like CusterProfiler will only work on the Entrez_IDs. I want to see in which pathways are these lincRNAs enriched/ playing an important role.
Are there any tools or R packages which can help me in performing GO and GSEA studies on these set of lincRNAs?