Question

What's the meaning of the numbers in each column in the .txt file generated by snpEFF

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4.8 years ago

weishang ▴ 20

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I get the snpEff_genes.txt file generated by snpEFF, but what's the meaning of those numbers in each column in this file? Are they the likelihood/probability or something else？Thanks a lot.

SNP gene • 899 views

ADD COMMENT • link updated 4.8 years ago by Pierre Lindenbaum 161k • written 4.8 years ago by weishang ▴ 20

score 2 · Accepted Answer · 2019-06-22

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4.8 years ago

Pierre Lindenbaum 161k

http://snpeff.sourceforge.net/SnpEff_manual.html

counts of number of variants affecting each transcript and gene.

ADD COMMENT • link 4.8 years ago by Pierre Lindenbaum 161k

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Thank you very much indeed( ͡° ͜ʖ ͡°)

ADD REPLY • link 4.8 years ago by weishang ▴ 20

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If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted.

Upvote|Bookmark|Accept

ADD REPLY • link 4.8 years ago by Pierre Lindenbaum 161k