Question: What's the meaning of the numbers in each column in the .txt file generated by snpEFF
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gravatar for weishang
15 months ago by
weishang10
China/Shanghai/Shanghai Ocean University
weishang10 wrote:

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I get the snpEff_genes.txt file generated by snpEFF, but what's the meaning of those numbers in each column in this file? Are they the likelihood/probability or something else?Thanks a lot.

snp gene • 330 views
ADD COMMENTlink modified 15 months ago by Pierre Lindenbaum130k • written 15 months ago by weishang10
2
gravatar for Pierre Lindenbaum
15 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum130k wrote:

http://snpeff.sourceforge.net/SnpEff_manual.html

counts of number of variants affecting each transcript and gene.

ADD COMMENTlink written 15 months ago by Pierre Lindenbaum130k

Thank you very much indeed( ͡° ͜ʖ ͡°)

ADD REPLYlink written 15 months ago by weishang10

If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted.

Upvote|Bookmark|Accept

ADD REPLYlink written 15 months ago by Pierre Lindenbaum130k
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