Question: What's the meaning of the numbers in each column in the .txt file generated by snpEFF
0
gravatar for weishang
5 months ago by
weishang0
China/Shanghai/Shanghai Ocean University
weishang0 wrote:

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I get the snpEff_genes.txt file generated by snpEFF, but what's the meaning of those numbers in each column in this file? Are they the likelihood/probability or something else?Thanks a lot.

snp gene • 179 views
ADD COMMENTlink modified 5 months ago by Pierre Lindenbaum124k • written 5 months ago by weishang0
2
gravatar for Pierre Lindenbaum
5 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum124k wrote:

http://snpeff.sourceforge.net/SnpEff_manual.html

counts of number of variants affecting each transcript and gene.

ADD COMMENTlink written 5 months ago by Pierre Lindenbaum124k

Thank you very much indeed( ͡° ͜ʖ ͡°)

ADD REPLYlink written 5 months ago by weishang0

If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted.

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ADD REPLYlink written 5 months ago by Pierre Lindenbaum124k
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