Question: How to create manifest file for Illumnina GTCtoVCF
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gravatar for NS
5 months ago by
NS0
NS0 wrote:

Hi

I have several idat and gtc files. I want to convert them to standard vcf format to obtain the genotype information. I found that llumnia has developed a python source for parsing gtc files (https://github.com/Illumina/GTCtoVCF). However it requires manifest file / Bead pool manifest.


So my question is :
1) How can I create a manifest file using idat or gtc files that I have ?
2) What is the format of the manifest file, what information does it contain ?

Thanks

ADD COMMENTlink modified 5 months ago • written 5 months ago by NS0
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