Question: Converting MAF to Fasta
gravatar for little_more
19 months ago by
little_more40 wrote:

I used Mugsy for multiple alignment. Now I want to convert an output MAF file to a fasta file. I know that mugsy provides a script but I don't understand how to use it (I don't know Perl). In the description of the script it says that it should be called this way:

./ [label] < maf > fasta

Does it mean I need to provide maf file and the name of the output fasta file or I need to provide the names of the input fasta files with genomes? The script doesn't print anything so I can't understand what's going on there.

Or maybe someone knows other ways to convert MAF to fasta?

mugsy alignment maf fasta • 1.2k views
ADD COMMENTlink written 19 months ago by little_more40

OK, let your maf file called myfile.maf and we want the output fatsa file to be myfile.fasta

Then we use this command:

./ < myfile.maf > myfile.fasta

Similar question:
Convert MAF to FASTA

ADD REPLYlink modified 4 months ago • written 19 months ago by Medhat8.8k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 957 users visited in the last hour