Number of samples with rare mutation per gene in gnomAD
0
0
Entering edit mode
4.8 years ago

HI,

I would like to know if there is a way to know how many samples are mutated per gene in gnomAD. Let me explain : In gnomAD vcf you can see the variants an their associated allele frequency in the population. I already filter the vcf based on AF to only get rare mutation with a high VEP impact. Now I can count the number of rare high impact variants per gene. However is there a way to know how many samples per gene harbor these rare mutations ? For now I use a proxy by summing the number of variants with AC ( Allele count) >= 1 . Not the best proxy I guess but I cannot find other ideas as the individual SNP data are not available.

Any idea ?

Thanks

gnomad mutation • 824 views
ADD COMMENT

Login before adding your answer.

Traffic: 2115 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6