Hi everyone,
I used HTSeq-count
to count mapped reads to genes giving in input the bam
file get from STAR
and the gff
annotation file downloaded from NCBI (used also for indexing the genome, also downloaded from NCBI).
I want to find differentially expressed genes in different species of Drosophila. The problem is that these species have gene symbols like LOCXXXXXXXXX where X are numbers. E.g. Using NCBI Blast, LOC108015140 in D. suzukii corresponds to Zw in D. melanogaster.
Is there a way to "translate" these gene symbols into the D. melanogaster one?
That gene location is actually from
Drosophila suzuki
(https://www.ncbi.nlm.nih.gov/gene/108015140 ).Yes, sorry, I edit the post.