How to convert vcf to SPAGeDi input format?
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2.5 years ago
rimgubaev ▴ 270

Hello everyone! I got filtered VCF file with SNPs produced by GATK and I want to make kinship matrix in SPAGeDi. I tried to format my VCF using NGSToolsApp but it produces file which seem to be truncated since I can't open it in gedit and SPAGeDi (I use version 1.3a available for linux) also produces an error. Are there any other programs to perform such formatting?

SPAGeDi VCF Kinship • 612 views
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