Entering edit mode
4.8 years ago
elbarchef
▴
10
Hello guys,
- i install ubuntu next to windows to use SPAdes which works just under linux but when i run this software it returns this error -> == Error == system call for: "['/usr/lib/spades/bin/spades', '/home/spades_test/K55/configs/config.info']" finished abnormally, err code: -11
- when I contacted support Spades, they sent me this mail, but I still can't solve the problem: Memory limit (in Gb): 3 So, you're likely running out of RAM. I doubt you could do any useful assembly having such low amount of RAM.
- when i tap free -h i have this result! image
It of course depends on multiple factors how much RAM the tool needs but if you google around you find posts from people reporting the same issues even on bigger HPC nodes with dozens or hundreds of GB RAM. A laptop is certainly not suitable to do genomic assemblies. Either check if your institution provides access to a computing cluster, or check if Galaxy can offer what you need. If both fails, you probably need to check cloud services such as AWS to perform your analysis.