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4.8 years ago
ricordo.yan
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0
I am very new to Biopython and need someone to help me out. My problem is the following, I have 100 geneIDs and I want to know their FASTA sequence. For example, I have this gene 2712\tGCA_000750535.1, 2712 is the geneID. What function can I use to solve this problem? Thank you everybody.
If it's Entrez Gene ID (human/mouse/other popular organism), you can use the
TxDbpackage to get sequences. biomaRt should have similar provisions. Unfortunately, both of these are in R and not BioPython. Maybe someone else can give you python specific resources.Thank you so much for the help