Question: help with biopython
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gravatar for ricordo.yan
11 months ago by
ricordo.yan0 wrote:

I am very new to Biopython and need someone to help me out. My problem is the following, I have 100 geneIDs and I want to know their FASTA sequence. For example, I have this gene 2712\tGCA_000750535.1, 2712 is the geneID. What function can I use to solve this problem? Thank you everybody.

sequence • 159 views
ADD COMMENTlink written 11 months ago by ricordo.yan0

If it's Entrez Gene ID (human/mouse/other popular organism), you can use the TxDb package to get sequences. biomaRt should have similar provisions. Unfortunately, both of these are in R and not BioPython. Maybe someone else can give you python specific resources.

ADD REPLYlink written 11 months ago by RamRS27k

Thank you so much for the help

ADD REPLYlink written 11 months ago by ricordo.yan0
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