Entering edit mode
4.8 years ago
brunobsouzaa
▴
830
Hi Guys, I'm using bash loop for calling CNVs between multiple samples using cnvkit. The loop is the following:
for i in $(ls *.Tumor.cnr | rev | cut -c 10- | rev | uniq)
do
cnvkit.py call ${i}.Tumor.cnr -y -m threshold -t=-2.0,-0.4,0.3,0.8,1.1,1.4,1.7 -o ${i}.call.cnr;
done;
But I'm getting the following error: sintax error near token'
done'
Does anyone know what I'm doing wrong??
Sorry guys, found the error.... No need to respond!
Post what the error was so it helps someone in future.