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• how to find tissue specific eqtls?
  Say, I have two tissues, from each one I called eQTLs, with effect sizes and p-values. My questio...
• GTEx files, single tissue cis-eQTLs
  Hi all, I'm using the GTEx analyzed files from single tissue eQTLs at https://www.gtexportal.org...
• How to identify whether a GWAS SNP is a pseudogene eQTL.
  I get the dataset form GTEx and also have the dbSNPs. I want to explore whether a SNP is a known ...
• Tag Snp, Independent Gwas, Eqtl Results
  I seems many gwas/eqtl results does not report all associations, but only those independent featu...
• Annotation of GWAS results with GTEx
  Dear all, I have a list of SNPs as a GWAS result and I would like add the information whether a...
• Questions of rs17632542 in cis-eQTL-GTEx-V8
  Hi All, I find a very confusing question about eQTL of rs17632542. rs17632542 was identified a...
• Connect Eqtl And Gwas Study
  eQTL tries to regress each gene expression against each SNP, in order to find those regulatory el...
• Reproduction eQTL GTex Box plot
  HiI need to regenerate the eqtl boxplot graph forsome of my snps of interest. I can see the eqt...
• Is it possible to run Matrix eQTL with multiple samples per patient?
  I have RNA-Seq data and SNP data for 60 patients before (baseline) and one week after a drug trea...
• How to determine effect of SNP on the expression of pseudogene.
  Hi i am working on linkage of pseudogene to the progression of disease. I have list of pseudogene...
• Assessing Conditinal Independence Of Genes In Trans-Eqtl Cluster
  Hi, I've identified a SNP that is associated with a variable of interest (lets just call it heig...
• How does RNA relative abundance relate to SNPs and eQTLs?
  I am looking at the GTex portal for significantly different expression of certain genes, within i...
• Genotype input in matrix eqtl with dosage dataset
  I have performed eQTL with matrix eQTL tool before with hard call genotype. I wonder if anyone ha...
• Help With Snp Array
  Dear all, First time to touch SNP array. I have a set of SNP array downloaded from TCGA. Now I a...
• Tool For Eqtl Mapping
  I have a significant SNP from a Genome Wide Association Study and I want to find correlation betw...
• Permutation Based Thresholds For Eqtl Analysis?
  I wish to determine a significance threshold for a small eQTL study. I computed p-values for the...
• GTEX - how to upload more than one rsIDs to get gene expression or eQTL information
  Hi everyone, I am trying to see how my variants affect the host gene -or other eQTLs- to see th...
• Plots using GWAS and eQTL datasets with locuszoom
  Does anyone know how to include two datasets in locuszoom ? Something like this  Plots ? On the l...
• Visualisation of SNPs in R
  Does anyone have any suggestions of how best to visualise SNP locations in relation to their near...
• Download all eQTL data for all the 9 tissues from GTEx Portal
  Hi, We are working on eQTL analyis of Human Heart samples and would like to use the eQTL data (f...
• Eqtl Analysis Of Snps And Cis- Or Trans-Related Genes
  Hello friends, recently I want to have a look at relationship between some disease related SNPs ...