Entering edit mode
4.8 years ago
moh.uaf2356
•
0
I have this kind of data i want to create heat map with pheatmap, I want to use x as a row sides , and i want add phylum column as annotation row. but i am confused how to arrange data
x Phylum HL HR ML MR LL LR RL RR
Bacillus Firmicutes 3.640681 4 2.157895 3 4.11667 6.386111 0.95 3.636207
Achromobacter Proteobacteria -0.5201 -1 3.210526 4 2.85 -1.00278 -0.31667 -0.95
Burkholderia Proteobacteria -0.5201 2 3.210526 0 -0.95 1.10833 -0.31667 -0.95
Rhizobium Proteobacteria -0.104002 -1 -1 2 -0.95 -1.00278 -0.31667 1.67069
Cupriavidus Proteobacteria -0.5201 0 -1 -1 -0.95 -0.100278 1.58333 1.67069
Parvibaculum Proteobacteria -0.5201 2 -1 0 -0.95 -1.00278 0.95 -0.95
Enterobacter Proteobacteria -0.5201 -1 0.052632 -1 -0.95 1.10833 0.95 -0.29483
Actinomadura Actinobacteria -0.5201 -1 1.105263 1 -0.95 2.163889 -0.95 -0.95
Gemella Firmicutes 0.728136 1 -1 -1 -0.95 -1.00278 -0.95 -0.29483
Sinorhizobium Proteobacteria -0.10402 -1 0.052632 -1 2.85 0.052778 -0.95 -0.95
Streptosporangium Proteobacteria 0.312058 -1 1.105263 0 0.316677 -1.00278 -0.95 -0.95
Azospirillum Proteobacteria 1.144214 -1 -1 -1 0.31667 -1.00278 -0.31667 -0.95
Microbispora Actinobacteria -0.10402 0 1.105263 0 0.31667 -1.00278 -0.95 -0.95
Micromonospora Actinobacteria -0.5201 1 -1 -1 -0.95 -1.00278 -0.31667 1.015517
Salmonella Proteobacteria -0.5201 -1 -1 -1 -0.95 -1.00278 0.316667 1.67069
Filimonas Spirochaetes -0.5201 1 -1 -1 0.316667 2.1638889 -0.95 -0.95
Aeromicrobium Proteobacteria -0.5201 -1 -1 0 -0.95 -1.00278 2.21667 -0.95
Actinomyces Actinobacteria -0.5201 -1 -1 -1 0.316667 -1.00278 -0.95 2.35862
Streptococcus Firmicutes -0.5201 -1 -1 -1 0.316667 -1.00278 -0.95 2.325862
Micrococcus Actinobacteria 0.728136 0 -1 -1 -0.95 0.052778 -0.95 -0.95
your text is unreadable. please post in proper formatting. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar.
Show us what (code) you have tried.