I was wondering if anyone could help me with this. I need to run the picard command CollectRnaSeqMetrics below
java -jar picard.jar CollectRnaSeqMetrics \ I=input.bam \ O=output.RNA_Metrics \ REF_FLAT=ref_flat.txt \ STRAND=SECOND_READ_TRANSCRIPTION_STRAND \ RIBOSOMAL_INTERVALS=ribosomal.interval_list
and I need to create the interval_list for hg38. Is there a list I can download or if I need to create this, could someone kindly advice/guide?
Thanking you in advance!