Strand information for reference genome
1
0
Entering edit mode
4.7 years ago
Gene_MMP8 ▴ 240

What is the default strand of the reference genome hg38/hg19? If I am extracting bases from the genome using bedtools getfasta and not specify the strand explicitly, from which strand are the bases getting extracted?

sequencing Assembly • 866 views
ADD COMMENT
1
Entering edit mode
4.7 years ago

That would be the forward strand, in which the first base has a lower coordinate than the second.

ADD COMMENT

Login before adding your answer.

Traffic: 3019 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6