Question: How to analyze the 450K methylation data from UCSC Xena?
gravatar for dz2353
10 weeks ago by
dz235380 wrote:

Hi, there,

I am working on the 450k methylation microarray data coming from the UCSC Xena. I plan to use minfi or ChMAP to detect the DMCs and DMRs, but the input files for those two packages are in .idat format. The data come from UCSC Xena is not that kind of format. Any advice and suggestions? Also, I have tried to download the .idat data from TCGA, but TCGA just provides .txt files. Thnanks in advance.

R • 160 views
ADD COMMENTlink modified 10 weeks ago by RamRS24k • written 10 weeks ago by dz235380
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