Question: hapcut2 output and figures
gravatar for rob234king
11 months ago by
UK/Harpenden/Rothamsted Research
rob234king600 wrote:

I have run Hapcut2 and have a VCF file. I can't see in the VCF where it has assigned the snp to one haplotype or the other, any ideas where that information is kept? I can see it in the other hapcut output file but not the VCF which seems wrong. I assume can separate the two haplotypes in vcf to two files so can have two tracks for each haplotype in a browser. Any prior experience of phased snp output would be welcome. Also any ideas how to produce a phased block chromosome image using the VCF or hapcut2 file. Assume someone must have done this before

phasing hapcut2 • 330 views
ADD COMMENTlink written 11 months ago by rob234king600
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1009 users visited in the last hour