Biopython BLAST: how to include minimum coverage in the parameters?
0
0
Entering edit mode
4.6 years ago
lea.picard • 0

I am using Biopython's NCBIWWW to perform Blast remotely. However, it seems to be impossible to limit the search in terms of coverage, as is possible through standalone Blast.

How come? Is there a way to circumvent this?

biopython blast coverage • 1.2k views
ADD COMMENT
0
Entering edit mode

as is possible through standalone Blast

Is it? Don't you mean identity? Or it is a new feature but as far as I know it not possible in standalone blast.

I checked this document: https://www.ncbi.nlm.nih.gov/books/NBK279684/

EDIT:

Just saw the -qcov_hsp_perc param, but I think this is per HSP

ADD REPLY

Login before adding your answer.

Traffic: 2471 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6