.hic to .cool

Question

[c.chakraborty]

Hi everyone,

Are there tools to convert format to transform .hic files to .cool or .h5 files in R?

Thanks in advance, Chai

[zx8754]

Did you try to search? Maybe this? https://github.com/deeptools/HiCExplorer

[c.chakraborty]

Yeah I did, I got a link to HiCompare and from that to HiC-pro, straw tool and also the HiC explorer. I am interested in running the data visualization tools from HiC explorer, so I am installing the requirements tools, but I was wondering if there was already a vignette in Bioconductor for data transformation.