.hic to .cool
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3.4 years ago
c.chakraborty ▴ 170

Hi everyone,

Are there tools to convert format to transform .hic files to .cool or .h5 files in R?

Thanks in advance, Chai

HiC r • 1.8k views
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Did you try to search? Maybe this? https://github.com/deeptools/HiCExplorer

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Yeah I did, I got a link to HiCompare and from that to HiC-pro, straw tool and also the HiC explorer. I am interested in running the data visualization tools from HiC explorer, so I am installing the requirements tools, but I was wondering if there was already a vignette in Bioconductor for data transformation.

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