I want to do a differential expression analysis using DESeq2 and I have a question regarding the input. Currently I have csv file with following information for each sample. Unfortunately, I dont have access to raw data. I am trying to figure out how to input this data. Can I straightaway use expected counts?
gene_id transcript_id(s) length expected_count FPKM AT1G01010 AT1G01010.1 1688 79 2.43
Can some one help me to go forward with my analysis? Thank you in advance. VH