I have long read data in a fasta file (that I got from converting BAM to fasta) that I'm trying to build a graph out of using the instructions here https://github.com/vgteam/vg/wiki/Long-read-assemblies-using-vg-msga#long-read-assembly.
One thing that could be the issue is that, my reads have >UUIDs at the start and not >ref so I left -b flag out entirely.
What I'm finding even more weird is that it fails silently even when I add -D.
Could I be going about it all wrong?
The computer I'm using has 128G or RAM.
Works on a different dataset of unaligned reads.