Use arrows to indicate CTCF motifs orientation
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4.5 years ago
ste.lu ▴ 80

Hi All!

I've used gimmemotifs tool to get the CTCF motifs orientation from a Chip-Seq experiment. I managed to colour code the bed file according to the motif strandedness (if the motif is on the positive or negative strand) and visualise them on IGV. I was wondering if anyone knows how to use arrows to highlight the directionality of the motif, either in IGV or any other software to visualise the motif orientation.

I think the question could be reshaped also as: Do you know I I can use triangles instead of boxes on IGV? Do you know any similar software of package that allows me to do it?

Thanks

sequencing ChIP-Seq • 846 views
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