Question

Variant annotation tools

0

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4.5 years ago

a.hasankhani74 • 0

hi Is there software for SNP annotation instead of snpEff? how can I plot my vcf file?

SNP • 1.2k views

ADD COMMENT • link updated 4.5 years ago by Kevin Blighe 87k • written 4.5 years ago by a.hasankhani74 • 0

score 5 · Accepted Answer · 2019-10-27

5

Entering edit mode

4.5 years ago

Kevin Blighe 87k

Variant Effect Predictor (VEP)
ANNOVAR

'to plot' a VCF file makes no sense - please elaborate on this point. VEP can additionally produce a HTML output file with graphics illustrating different features of your annotated variants - perhaps this is what you mean.

Kevin

ADD COMMENT • link 4.5 years ago by Kevin Blighe 87k